There are a number of hidden options that can be specified for ibis.iSDM. Currently supported are:
'ibis.runparallel'
:logical
value on whether processing should be run in parallel.'ibis.nthread'
:numeric
value on how many cores should be used by default.'ibis.setupmessages'
:logical
value indicating whether message during object creation should be shown (Default:NULL
).'ibis.engines'
: Returns avector
with all valid engines.'ibis.use_future'
:logical
on whether the future package should be used for parallel computing.
Examples
ibis_options()
#> $ibis.cleannames
#> [1] TRUE
#>
#> $ibis.corPred
#> [1] 0.7
#>
#> $ibis.dependencies
#> [1] "pdp" "scales" "biscale" "modEvA"
#> [5] "dplyr" "geodist" "geosphere" "progress"
#> [9] "glmnet" "glmnetUtils" "xgboost" "BoomSpikeSlab"
#> [13] "INLA" "inlabru" "gnlm" "cubelyr"
#> [17] "matrixStats" "Boruta" "abess" "gdalUtilities"
#> [21] "dbarts" "mboost" "rstan" "cmdstanr"
#> [25] "biscale" "poems" "BiocManager"
#>
#> $ibis.engines
#> [1] "GDB-Model" "BART-Model" "INLABRU-Model" "BREG-Model"
#> [5] "GLMNET-Model" "GLM-Model" "SCAMPR-Model" "INLA-Model"
#> [9] "STAN-Model" "XGBOOST-Model"
#>
#> $ibis.futurestrategy
#> [1] "sequential"
#>
#> $ibis.nthread
#> [1] 3
#>
#> $ibis.priors
#> [1] "INLAPrior" "BARTPrior" "GDBPrior" "GLMNETPrior" "XGBPrior"
#> [6] "BREGPrior" "STANPrior"
#>
#> $ibis.pseudoabsence
#> Background Settings: 5 parameters
#>
#> $ibis.runparallel
#> [1] FALSE
#>
#> $ibis.seed
#> [1] 12494
#>
#> $ibis.setupmessages
#> [1] TRUE
#>